When I press the channel there is now a time delay of a few seconds between the start of the program and the generator actually starting, resulting in the frequencies not starting off right at first.

Check your cabling. Sounds like there may be a loose connection between the computer and the generator, causing delays in the generator getting valid commands.

You can verify if this is happening by checking the bottom of spooky2 and seeing if your error counts are going up. RE: and WE: are the two to really look closely at.

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